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Requirements for the Ph.D. Degree
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  Graduate School–New Brunswick 2014–2016 Programs, Faculty, and Courses Computational Biology and Molecular Biophysics 118 Requirements for the Ph.D. Degree  

Requirements for the Ph.D. Degree


Course Requirements

Three core courses (9 credits; courses described below; grade of B or better required):

Two from the following (or other approved course)
16:160:537  Biophysical Chemistry I (3)
16:160:538  Biophysical Chemistry II (3)
16:118:507  Physics of Living Matter (3)
16:118:513  Molecular Simulations in Computational Biophysics (3)
16:642:613  Mathematical Foundations of Systems Biology (3)
16:198:674  Introduction to Bioinformatics (3)
16:155:507  Analytical Methods Chemical and Biochemical Engineering (3)
16:642:527  Methods of Applied Mathematics (3)
16:125:572  Biocontrol, Modeling, and Computation (3)
16:125:573  Kinetics, Thermodynamics, and Transport in Biomedicine (3)

One foundational course in biochemistry and/or molecular biology (3) from:

Graduate Level Foundational Courses:

16:160:537  Biophysical Chemistry I (3)
16:695:538  Fundamentals of Molecular Biosciences (6)
16:695:539  Experimental Methods in Molecular Biosciences (2)
16:148:514  Molecular Biology of Cells (3)
16:115:511/512 and 16:694:407/408  Molecular Biology and Biochemistry (3,3)
16:115:503   Biochemistry (4) - fall
16:115: 504  Biochemistry (4) - spring
16:718:680  Cellular and Molecular Pharmacology (3)
16:761:580  Molecular Basis of Physiology (3)


Undergraduate Level Foundational Courses:
 
(*Must be greater than or equal to 300 level "with extra work" and taken as a grad student to receive graduate credit.)

01:694:301  Introductory Biochemistry and Molecular Biology (3)
11:115:403  General Biochemistry (4)

Three additional 3-credit courses (9 credits):

These serve as CBMB elective courses and could consist of joint PGP core courses

These may consist of additional core courses or elective courses in the fields of molecular biophysics and computational biology.With the approval of their thesis adviser or the graduate program director, students may select electives from virtually all graduate courses offered by life science, mathematical and physical sciences, computer science, and engineering departments at Rutgers. Frontier topics courses that have been recently offered or are under development include:

Biology and Bioinformatics of Cancer
Protein Folding and Misfolding in Disease
Structural and Systems Biology of Transcription
Genetic Systems and Structures (16:118:617:02)

Two semesters of 1-credit seminars in areas relevant to computational biology and molecular biophysics (2 credits)

16:118:617  Seminar in Quantitative Biology (BA) (focused on the Proteomics/BioMaPS seminar series)
16:160:601,602  Seminar in Molecular Biophysics (1,1)
BME seminar series

Ethical Scientific Conduct (0-1 credits, to be refreshed after four years in accordance with NIH requirements). Available in most science- or engineering-oriented graduate programs and online as well.

16:115:556  Ethical Scientific Conduct (1)
16:125:601  Engineering Ethics and Seminar (1)
16:137:500  Ethics in Science and Technology (1)
16:486:501  Responsible and Ethical Research I (0)  (no tuition or grades; will appear on the transcript)


Research Rotations

In the first year, students typically engage in 1-3 rotations (16:118:621 and 622; 1 credit each semester or winter break).  Rotations provide the opportunity to explore research (for two months per rotation) in the quest of finding a group in which they would like to do their dissertation research. The format for lab rotations will vary depending upon the research group. Students may be given an independent laboratory research project and/or may assist other members of the lab in data acquisition and analysis. During this time, the student attends and participates in laboratory group meetings and related events. 

Teaching Requirement

Teaching assistantships (TAs; 6 credits/semester) are not formally required, but teaching of some form is required. A possible alternative to doing a TA could be assisting with several aspects of teaching for a course (by arrangement with the professor). This might consist of such activities as preparing and performing demonstrations, preparing and grading quizzes, and/or preparing and providing a lecture. This kind of alternative teaching can be arranged upon agreement with the graduate program director and the professor teaching the course (and can be indicated on the student transcript as "Teaching Apprenticeship").

Examination and Thesis Requirements

The format of the qualifying examination(s) will be decided between the student and his or her adviser. The choices are: (1) the student will follow the guidelines of his or her adviser's home department, and (2) the student will follow the guidelines of the CBMB program (described below).
A. Written component of CBMB qualifying exam (third semester; detailed in Common Rules for the Written Exam):

Students prepare a written proposal for their thesis research that must be not exceed 20 pages single-spaced (not including references). The preparation of the proposal is intended to educate the student (i.e., about the work that has been done in the field to date and the techniques that will be useful for the work [e.g., the "how to" and the principles]) and to promote creative thinking about the outstanding problems in the field and ways to solve these problems. The student should obtain the application for admission to candidacy for the doctoral degree from the office of the graduate school and submit it to the chair of the committee at the time of the examination.

B. Oral component of CBMB qualifying exam (fourth semester):

The student will defend the proposal and show relevant knowledge in an oral presentation of approximately 30 minutes in duration. The date for this component of the qualifying exam should be set up with the committee members at least two weeks before the scheduled date of the exam. The Exam Committee will meet after the exam and decide among the following three options: (1) Pass; (2) Fail; (3) Fail with an opportunity to repeat the exam. In the case of option #3, the student must repeat the exam within three months after the first exam. Repeat exams will be graded as Pass or Fail only. If the student passes Exam B, the members of the candidate's committee and the graduate director will sign the application for admission to candidacy for the doctoral degree (see Forms). This form must be returned to the office of the associate director of graduate studies. If the student does not pass the qualifying exam, she or he may be eligible to earn a master's degree at this stage.  (See section on CBMB Master's Program.) 


Students are expected to submit and defend a dissertation within five years of starting the program.

 
For additional information, contact RU-info at 732-445-info (4636) or colonel.henry@rutgers.edu.
Comments and corrections to: Campus Information Services.

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